Pepinfo
Pepinfo produces information on amino acid properties (size, polarity, aromaticity, charge etc). Hydrophobicity profiles are also available and are useful for locating turns, potential antigenic peptides and transmembrane helices. Various algorithms are employed including the Kyte and Doolittle hydropathy measure - this curve is the average of a residue-specific hydrophobicity index over a window of nine residues. When the line is in the upper half of the frame, it indicates a hydrophobic region, and when it is in the lower half, a hydrophilic region.
Exercise: pepinfo
Program: pepinfo
choose xlrhodop.pep
Remember that you produced this in a previous exercise, use the upload function!
Plots simple amino acid properties in parallel
Graph type [png]:
You will see pictures that look like this (Please scroll down to see!!):
Exercise: pepinfo
Pepinfo produces information on amino acid properties (size, polarity, aromaticity, charge etc). Hydrophobicity profiles are also available and are useful for locating turns, potential antigenic peptides and transmembrane helices. Various algorithms are employed including the Kyte and Doolittle hydropathy measure - this curve is the average of a residue-specific hydrophobicity index over a window of nine residues. When the line is in the upper half of the frame, it indicates a hydrophobic region, and when it is in the lower half, a hydrophilic region.
Exercise: pepinfo
Program: pepinfo
choose xlrhodop.pep
Remember that you produced this in a previous exercise, use the upload function!
Plots simple amino acid properties in parallel
Graph type [png]:
You will see pictures that look like this:
