CLUSTAL 2.0.12 multiple sequence alignment HIV1MN -----------------------------------------FFR------EDLAFLQGKA HIV1OY -----------------------------------------FFR------EDLAFPQGKA HIV1H2 -----------------------------------------FFR------EDLAFLQGKA HIV1PV -----------------------------------------FFR------EDLAFLQGKA HIV1B5 -----------------------------------------FFR------EDLAFLQGKA HIV1N5 -----------------------------------------FFR------EDLAFPQGKA HIV1ND -----------------------------------------FFR------EDLAFPQGKA HIV1Z2 -----------------------------------------FFR------EDLAFPQGKA HIV1U4 -----------------------------------------FFR------ENLAFQQGEA SIVCZ ---------------STKKKRLLAVWARGTPNERLHRKTGEFFR------ERLAFPQREA HIV2CA --------------------------------------TGGFFRDWPLGKEAPQFPRGPS HIV2RO --------------------------------------TGRFFRTGPLGKEAPQLPRGPS HIV2SB --------------------------------------TGWFFRAWTMGKEAPQLPRGPK HIV2KR --------------------------------------TGWFFRDWPMGKEASQLPRDPS HIV2ST ------------------KTRLLEMWQGRTHHGKMPRKTGGFFRVGPMGKEAPQFPCGPN HIV2D1 VLELWKGGTLGETVPSTQKTGLLEVWQVRTHHGKLPGKTGRFFRDGPTGKAAPQLPRGPS HIV2G1 ------------------------MWQDRTRHGKMPRKTGRFFRDGSMGKEAPQLPRGPS Smanga_S4 -------------------------------------KTGGFFRAWPMGKEAPQFPHGPD Smanga_SP ----------------------------------MPRKTSGFFRAWPMGKEAPQFPHGPD HTLV ------------------------------------------------------------ HIV1MN -EFSSEQNRAN----------------SPTRRELQVWGRDNNSLSEAGEEAGDDRQGPVS HIV1OY REFSSEQTRAN----------------SPTSRELRVWGRDNNSPSEA----GADRQGTVS HIV1H2 REFSSEQTRAN----------------SPTRRELQVWGRDNNSPSEAG----ADRQGTVS HIV1PV REFSSEQTRANSPTIS----SEQTRANSPTRRELQVWGRDNNSPSEAG----ADRQGTVS HIV1B5 REFSSEQTRANSPTIS----SEQTRANSPTRRELQVWGRDNNSPSEAG----ADRQGTVS HIV1N5 REFSSEQTRAN----------------SPTRRELQVWGRDNNSLSEAG----ADRQGTVS HIV1ND GEFSSEQTRAN----------------SPTSRELRVWGGDN-PLSETG----AERQGTVS HIV1Z2 GELSSEQTRAN----------------SPTSRELRVWGRDN-PLSETG----AERQGTVS HIV1U4 REFSSEQTRAN----------------SPTSRNLWDGGKDD-LPCETG----AERQGTDS SIVCZ RQLCAEQNRTN----------------GPTDRELWVPGGREEPGEERG------REQSIS HIV2CA STGANTNSTPIGSSSGSTGEIYAAREKAEGAETETIQRGDRGLTAPRTRRGPMQGD-NRG HIV2RO SAGADTNSTPSGSSSGSTGEIYAAREKTERAERETIQGSDRGLTAPRAGGDTIQGATNRG HIV2SB FAGANTNSTPNGSSSGPTGEVHAAREKTERAETKTIQRSDRGLAASRARRDTTQRD-DRG HIV2KR PAGADTNSTPSRPSSRPAREVLAAREEAERAENETIQGGDRGLTAPRTRRDTTQRG-DRG HIV2ST PAGADTNSTPDRPSRGPTREVHAAREKAERAEREAIQRSDRGLPAARETRDTMQRD-DRG HIV2D1 SSGADTNSTPNRSSSGPVGEIYAAREKAERAEGETIQGGDGGLTAPRAGRDAPQRG-DRG HIV2G1 SSGADTNSTPSRSSSGSIGKIYAAGERAEGAEGETIQRGDGRLTAPRAGKSTSQRG-DRG Smanga_S4 ASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGG------------------DRG Smanga_SP ASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGG------------------NGG HTLV ------------------------------------------------------------ HIV1MN FSFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLGEMNLPRRWKPKMIGGIGGFIKVR HIV1OY FNLPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVR HIV1H2 FNFPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVR HIV1PV FNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVR HIV1B5 FNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVR HIV1N5 FSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVG HIV1ND FSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVR HIV1Z2 FNCPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVR HIV1U4 FSFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEDINLPGKWKPKIIGGIGGFIKVR SIVCZ TNLPQITLWQRPLIPVKVEGQLCEALLDTGADDTVIERIQLQGLWKPKMIGGIGGFIKVK HIV2CA LAAPQFSLWKRPVVTAHIEGQPVEVLLDTGADDSIVAGIELGSNYSPKIVGGIGGFINTK HIV2RO LAAPQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTK HIV2SB LAAPQFSLWKRPVVTAYIEDQPVEVLLDTGADDSIVAGIELGSNYSPKIVGGIGGFINTK HIV2KR FAAPQFSLWKRPVVTAYVEGQPVEVLLDTGADDSIVAGIELGSNYSPKIVGGIGGFINTK HIV2ST LAAPQFSLWKRPVVTAHVEGQPVEVLLDTGADDSIVAGVELGSNYSPKIVGGIGGFINTK HIV2D1 LATPQFSLWKRPVVTAFIEDQPVEVLLDTGADDSIVAGIELGDNYTPKIVGGIGGFINTK HIV2G1 LAAPQFSLWKRPVVTAYIEVQPVEVLLDTGADDSIVAGIQLGDNYVPKIVGGIGGFINTK Smanga_S4 FAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSIVAGIELGPNYTPKIVGGIGGFINTK Smanga_SP FAAPQFSLWRRPIVTAYIEEQPVEVLLDTGADDSIVAGIELGPNYTPKIVGGIGGFINTK HTLV ------------------------------------------------------------ HIV1MN QYDQITIGICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDG HIV1OY QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDG HIV1H2 QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDG HIV1PV QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDG HIV1B5 QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDG HIV1N5 QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDG HIV1ND QYDQILIEICGYKAMGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDG HIV1Z2 QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDG HIV1U4 QYDQILIEICGKKTIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPEMDG SIVCZ QFDNVHIEIEGRKVVGTVLVGPTPVNIIGRNILTQLGCTLVFPISSIETVPVKLKPGMDG HIV2CA EYKNVEIEVLGKRVRATIMTGDTPINIFGRNILTALGMSLNLPVAKIEPIKIMLKPGKDG HIV2RO EYKNVEIEVLNKKVRATIMTGDTPINIFGRNILTALGMSLNLPVAKVEPIKIMLKPGKDG HIV2SB EYKDVEIRVLNKKVRATIMTGDTPINIFGRNILTALGMSLNLPVAKIEPVKVTLKPGKDG HIV2KR EYKNVEIKVLNKKVKATIMTGDTPINIFGRNILTALGMSLNLPVAKVDPIKVILKPGKDG HIV2ST EYKNVEIRVLNKRVRATIMTGDTPINIFGRNILTALGMSLNLPVAKIEPIKIMLKPGKDG HIV2D1 EYKNVEIKVLNKRVRATIMTGDTPINIFGRNILATLGMSLNLPVAKLDPIKVTLKPGKDG HIV2G1 EIKNIEIKVLNKRVRATIMTGDTPINIFGRNILTALGMSLNLPIAKIEPIKVTLKPGKDG Smanga_S4 EYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKEG Smanga_SP EYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKDG HTLV ------------------------------------GKKAACNLANTGASRPWARTPPKA * . :: . :. .. HIV1MN PKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR HIV1OY PKVKQWPLTEEKIKVLIEICTEMEKEGKISKVGPENPYNTPVFAIKKKDSTKWRKLVDFR HIV1H2 PKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR HIV1PV PKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR HIV1B5 PKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR HIV1N5 PKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR HIV1ND PKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFR HIV1Z2 PKVKQWPLTEEKIKALTEICTEMEKEGKISRVGPENPYNTPIFAIKKKDSTKWRKLVDFR HIV1U4 PKVKQWPLTEEKIKALTEICNEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR SIVCZ PKVKQWPLSAEKIKALTEICQEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFR HIV2CA PRLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKKDKNKWRMLIDFR HIV2RO PKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR HIV2SB PKQRQWPLTREKIEALREICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR HIV2KR PKVRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR HIV2ST PKLRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR HIV2D1 PRLKQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR HIV2G1 PRLRQWPLTKEKIEALREICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR Smanga_S4 PKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR Smanga_SP PKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFR HTLV PRNQPVPFKPERLQALQHLVRKALEAGHIEPY--TGPGNNPVFPVKKANG-TWRFIHDLR *: : *:. *:: .* .: : . *::. .* *.* *.::* : .** : *:* HIV1MN ELNKKTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINN HIV1OY ELNKRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINN HIV1H2 ELNKRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINN HIV1PV ELNKRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINN HIV1B5 ELNRRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINN HIV1N5 ELNKRTQDFWEVQLGIPHPAGLKQ-KKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINN HIV1ND ELNKRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINN HIV1Z2 ELNKRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINN HIV1U4 ELNKRTQDFWEVQLGIPHTAGLKK-KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINN SIVCZ ELNKRTQDFWEVQLGIPHPAGLKK-KKSVTVLDVGDAYFSCPLDKDFRKYTAFTIPSINN HIV2CA ELNKVTQDFTEIQLGIPHPAGLAK-KRRITVLDVGDAYFSIPLHEDFRQYTAFTLPSVNN HIV2RO ELNKVTQDFTEIQLGIPHPAGLAK-KRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVNN HIV2SB ELNKVTQDFTEVQLGIPHPAGLAK-KRRITVLDVGDAYFSIPLYEDFRQYTAFTLPSVNN HIV2KR ELNKVTQEFTEIQLGIPHPAGLAK-KRRITVLDIGDAYFSIPLHEDFRQYTAFTLPTVNN HIV2ST ELNKVTQDFTEIQLGIPHPAGLAK-KKRITVLDVGDAYFSIPLHEDFRQYTAFTLPSINN HIV2D1 ELNRVTQDFTEIQLGIPHPAGLAK-KKRITVLDVGDAYFSIPLHEDFRQYTAFTLPSVNN HIV2G1 ELNRVTQDFTEIQLGIPHPAGLAK-KKRITVLDVGDAYFSIPLHEDFRQYTAFTLPSVNN Smanga_S4 ELNKVTQDFTEVQLGIPHPAGLAK-RRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNN Smanga_SP ELNKVTQDFTEVQLGIPHPAGLAK-RRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNN HTLV ATNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLRDAFFQIPLPKQFQPYFAFTVPQQCN * * :: . . * *. :.* : .:*: **:*. ** :.*: * ***:* * HIV1MN ETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQ HIV1OY ETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQ HIV1H2 ETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQ HIV1PV ETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQ HIV1B5 ETPGSGYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQ HIV1N5 ETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQ HIV1ND ETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQ HIV1Z2 ETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQ HIV1U4 ETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFRSQHPDIVIYQYMDDLYVGSDLEIGQ SIVCZ ETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFREKNPDITIYQYMDDLYVGSDLEIDQ HIV2CA AEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANSDVIIIQYMDDILIASDRTDLE HIV2RO AEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLE HIV2SB AEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVIIVQYMDDILIASDRTDLE HIV2KR AEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILVQYMDDILIASDRTDLE HIV2ST AEPGKRYIYKVSPQGWKGSPAIFQYTMRQVLEPFRKANPDIILIQYMDDILIASDRTDLE HIV2D1 AEPEKRYVYKVLPQGWKGSPAIFQFMMRQILEPFRKANPDVILIQYMDDILIASDRTGLE HIV2G1 AEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILIQYMDDILIASDRTGLE Smanga_S4 AEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDILIASDRTDLE Smanga_SP AEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQYMDDILIASDRTDLE HTLV YGPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHEDL * * ::* ***:*.**::*: : ::*:*:*. : : *****: :.* HIV1MN HRAKIEELRRHLLRWGFTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-VLPEKDSWTVN HIV1OY HRTKIEELRQHLLRWGFTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-MLPEKDSWTVN HIV1H2 HRTKIEELRQHLLRWGLTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-VLPEKDSWTVN HIV1PV HRTKIEELRQHLLRWGLTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-VLPEKDSWTVN HIV1B5 HRTKIEELRQHLLRWGFTTPDKKHQKEP-PFLWMGYELHPDKWTIQPI-VLPEKDSWTVN HIV1N5 HRTKIEELRQHLLRWGFTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-VLPEKDSWTVN HIV1ND HRTKIEELREHLLRWGFTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-NLPEKESWTVN HIV1Z2 HRTKIEELREHLLRWGFTTPDKKHQKEP-PFLWMGYELHPDKWTVQSI-KLPEKESWTVN HIV1U4 HRAKIEELRAHLLSWGFITPDKKHQKEP-PFLWMGYELHPDKWTVQPI-QLPEKDSWTVN SIVCZ HRKKVEELRQHLLKWGFTTPDKKHQKEP-PFLWMGYELHPDKWTVQPI-QLPEKEVWTVN HIV2CA HDKVVLQLKELLNNLGFSTPDEKFQKDP-PYRWMGYELWPTKWKLQKI-QLPQKEVWTVN HIV2RO HDRVVLQLKELLNGLGFSTPDEKFQKDP-PYHWMGYELWPTKWKLQKI-QLPQKEIWTVN HIV2SB HDKVVLQLKELLNGLGFSTPDEKFQKDP-PYQWMGYELWPTKWKLQKI-QLPQKEVWTVN HIV2KR HDRTVLQLKELLNGLGFSTPDEKFQKDP-PYKWMGYELWPTKWKLQKI-QLPQKEVWTVN HIV2ST HDRVVLQLKELLNGLGFSTPDEKFQKDP-PYQWMGYELWPTKWKLQRI-QLPQKEVWTVN HIV2D1 HDKVVLQLKELLNGLGFSTPDEKFQKDP-PFQWMGYELWPTKWKLQKI-QLPQKEIWTVN HIV2G1 HDKVVLQLKELLNGLGFSTPDEKFQKDP-PLQWMGYELWPTKWKLQKL-QLPQKEIWTVN Smanga_S4 HDRVVLQLKELLNGIGFSTPEEKFQKDP-PFQWMGYELWPTKWKLQKI-ELPQRETWTVN Smanga_SP HDRVVLQLKELLNSIGFSTPEEKFQKDP-PFQWMGYELWPTKWKLQKI-ELPQRETWTVN HTLV LLLSEATMASLIS-HGLPVSENKTQQTPGTIKFLGQIISPNHLTYDAVPTVPIRSRWALP : : *: ..::* *: * . ::* : * : . : : :* :. *:: HIV1MN DIQKLVGKLNWASQIYAGIKV--KQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP HIV1OY DIQKLVGKLNWASQIYAGIKV--KNLCKLLRGTKALTEVIPLTEEAELELAENREILKEP HIV1H2 DIQKLVGKLNWASQIYPGIKV--RQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP HIV1PV DIQKLVGKLNWASQIYPGIKV--RQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP HIV1B5 DIQKLVGKLNWASQIYPGIKV--RQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP HIV1N5 DIQKLVGKLNWASQIYAGIKV--RQLCKLLRGTKALTEVVPLTEEAELELAENREILKEP HIV1ND DIQKLVGKLNWASQIYAGIKV--KQLCKLLRGTKALTEVVPLTEEAELELAENREILKEP HIV1Z2 DIQKLVGKLNWASQIYPGIKV--RQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP HIV1U4 DIQKLVGKLNWASQIYAGIKV--KQLCKLLRGAKALTDIVTLTEEAELELAENREILKDP SIVCZ DIQKLIGKLNWASQIYPGIKI--KQLCKLIRGTKKLTDVVPLTPEAELELAENREIVSTP HIV2CA DIQKLVGVLNWAAQIYPGIKT--KHLCRLIRGKMTLTEEVQWTELAEAELEENRIILSQE HIV2RO DIQKLVGVLNWAAQLYPGIKT--KHLCRLIRGKMTLTEEVQWTELAEAELEENRIILSQE HIV2SB DIQKLVGVLNWAAQIYPGIKT--KHLCKLIRGKMTPTEEVQWTELAEAELEENKIILSQE HIV2KR DIQKLVGVLNWAAQIYPGIKT--KHLCRLIRGKMTLTEEVQWTELAEAELEENKIILSQE HIV2ST DIQKLVGVLNWAAQIYPGIKT--RNLCRLIRGKMTLTEEVQWTELAEAELEENKIILSQE HIV2D1 DIQKLVGVLNWAAQIYPGIKT--KHLCKLIRGKMTLTEEVQWTELAEAELEENKIILSQE HIV2G1 DIQKLVGVLNWAAQIYPGIKT--KHLCRLIKGKMTLTEEVQWTELAEAELEENKIILSQE Smanga_S4 DIQKLVGVLNWAAQIYPGIKT--KHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQE Smanga_SP DIQKLVGVLNWAAQIYPGIKT--KHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQE HTLV ELQALLGEIQWVSKGTPTLRQPLHSLYCALQRHTDPRDQIYLNPSQVQSLVQLRQALSQN ::* *:* ::*.:: . :: : * :: : : . . : : :. HIV1MN VHGVYYDPSKDLIAEVQKQG---------QGQWTYQIYQEPFKNLKTGKYARMRGAHTND HIV1OY VHGVYYDPSKDLVAELQKQG---------QGQWTYQIYQEPFKNLKTGKYARMRGAHTND HIV1H2 VHGVYYDPSKDLIAEIQKQG---------QGQWTYQIYQEPFKNLKTGKYARMRGAHTND HIV1PV VHGVYYDPSKDLIAEIQKQG---------QGQWTYQIYQEPFKNLKTGKYARMRGAHTND HIV1B5 VHGVYYDPSKDLIAEIQKQG---------QGQWTYQIYQEPFKNLKTGKYARMRGAHTND HIV1N5 VHGVYYDPSKDLIAEIQKQG---------QGQWTYQIYQEPFKNLKTGKYARMKGAHTND HIV1ND VHGVYYDPSKDLIAELQKQG---------DGQWTYQIYQEPFKNLKTGKYARTRGAHTND HIV1Z2 VHGVYYDPSKDLIAEIQKQG---------HGQWTYQIYQEPFKNLKTGKYARMRGAHTND HIV1U4 VHGVYYDPSKDLVAEIQKQG---------QDQWTYQIYQEPFKNLKTGKYARKRSAHTND SIVCZ VHGVYYDPDKELIAEIQKQG---------NCQWTYQIFQEPHKNLKTGKYARQRSAHTND HIV2CA QEGHYYQEEKELEATVQKDQ---------DNQWTYKIHQE-EKILKVGKYAKIKHTHTNG HIV2RO QEGHYYQEEKELEATVQKDQ---------ENQWTYKIHQE-EKILKVGKYAKVKNTHTNG HIV2SB QEGHYYQEEKELEATVQKDQ---------DNQWTYKVHQG-EKILKVGKYAKIKNTHTNG HIV2KR QEGCYYQEEKELEATVQKDQ---------DNQWTYKIHQG-EKILKVGKYAKIKNTHTNG HIV2ST QEGCYYQEEKELEATVQKDQ---------DNQWTYKIHQG-GKILKVGKYAKVKNTHTNG HIV2D1 QEGSYYQEEEELEATVIKSQ---------DNQWAYKIHQG-ERVLKVGKYAKIKNTHTNG HIV2G1 QEGYYYQEEKELEATIQKNQ---------DNQWTYKIHQE-EKILKVGKYAKIKNTHTNG Smanga_S4 QEGCYYQEGKPIEATVIKSQ---------DNQWSYKIHQE-DKVLKVGKFAKVKNTHTNG Smanga_SP QEGCYYQEGKPLEATVIKSQ---------DNQWSYKIHQE-DKILKVGKFAKIKNTHTNG HTLV CRSRLVQTLPLLGAIMLTLTGTTTVVFQSKEQWPLVWLHAPLPHTSQCPWGQLLASAVLL .. : : * : . . **. : . :.: : . HIV1MN VKQLTEAVQKIATESIVIWGKTPKFRLPIQK----------------ETWETWWTEYTXA HIV1OY VKQLTEAVQKITQESIVIWGKTPKFKLPIQK----------------ETWEAWWTEYWQA HIV1H2 VKQLTEAVQKITTESIVIWGKTPKFKLPIQK----------------ETWETWWTEYWQA HIV1PV VKQLTEAVQKITTESIVIWGKTPKFKLPIQK----------------ETWETWWTEYWQA HIV1B5 VKQLTEAVQKITTESIVIWGKTPKFKLPIQK----------------ETWETWWTEYWQA HIV1N5 VKQLTEAVQKIATESIVIWGKTPKFKLPIQK----------------ETWEAWWTEYWQA HIV1ND VKQLTEAVQKIATESIVIWGKTPKFKLPIQK----------------ETWETWWIEYWQA HIV1Z2 VKQLAEVVQKISTESIVIWGKTPKFRLPIQK----------------ETWETWWVEYWQA HIV1U4 VKQLTEVVQKVSTESIVIWGKIPKFRLPIQK----------------ETWEAWWMEYWQA SIVCZ IRQLAEAVQKIATESIVIWGKTPKFRLPVQK----------------ESWEAWWAEYWQA HIV2CA VKLLAQVVQKIGKEALVIG-RIPKFHLPVER----------------EVWEQWWDNYWQV HIV2RO IRLLAQVVQKIGKEALVIWGRIPKFHLPVER----------------EIWEQWWDNYWQV HIV2SB VRLLAQVVQKIGKEALVIWGRIPKFHLPVER----------------ETWEQWWDNYWQV HIV2KR VRLLAHVVQKIGKEALVIWGRIPKFHLPVER----------------ETWEQWWDNYWQV HIV2ST VRLLAQVVQKIGKEALVIWGRIPKFHLPVER----------------DTWEQWWDNYWQV HIV2D1 VRLLAQVVQKIGKEALVIWGRVPKFHLPVER----------------DTWEQWWDNYWQV HIV2G1 VRLLAQVVQKIGKEALVIWGRIPKFHLPVER----------------ETWEQWWDNYWQV Smanga_S4 VRLLAHVVQKIGKEALVIWGEVPKFHLPVER----------------EIWEQWWTDYWQV Smanga_SP VRLLAHVVQKIGKEAIVIWGQVPRFHLPVER----------------EIWEQWWTDYWQV HTLV LDKYTLQSYGLLCQTIHHNISTQTFNQFIQTSDHPSVPILLHHSHRFKNLGAQTGELWN- : : : ::: *. :: . : HIV1MN TWIPEWEVVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTNRGRQKVVS HIV1OY TWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVS HIV1H2 TWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVT HIV1PV TWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRLGKAGYLTNKGRQKVVP HIV1B5 TWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVT HIV1N5 TWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVP HIV1ND TWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVP HIV1Z2 TWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVP HIV1U4 TWIPEWEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVS SIVCZ TWIPEWEFINTPPLVKLWYSLETEPIPTTDTYYVDGAANRETKTGKAGYVTDKGKQKIIS HIV2CA TWIPDWDFVSTPPLVRLAFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDKVKI HIV2RO TWIPDWDFVSTPPLVRLAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKK HIV2SB TWIPDWDFVSTPPLVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYITDRGKDKVRI HIV2KR TWIPDWDFVSTPPLVRLAFNLVKDPIPGEETFYTDGSCNRQSKEGKAGYITDRGRDKVRI HIV2ST TWIPDWDFISTPPLVRLVFNLVKDPILGAETFYTDGSCNKQSREGKAGYITDRGRDKVRL HIV2D1 TWVPEWDFVSTPPLVRLTFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDRVRV HIV2G1 TWIPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKARYVTDRGRDKVRV Smanga_S4 TWIPDWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKL Smanga_SP TWIPEWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKL HTLV TFLKTAAPLAPVKALMPVFTLSPVIINTAPCLFSDGSTSRAAYILWDKQILSQ-RSFPLP *:: : . : : * * : **: .: : : .: :. HIV1MN LTDTTNQKTELQAIHLALQDSGLE--VNIVTDSQYALGIIQAQPD-----KSESELVSQI HIV1OY LTDTTNQKTELQAIHLALQDSGLE--VNIVTDSQYALGIIQAQPD-----KSESELVSQI HIV1H2 LTDTTNQKTELQAIYLALQDSGLE--VNIVTDSQYALGIIQAQPD-----QSESELVNQI HIV1PV LTNTTNQKTELQAIYLALQDSGLE--VNIVTDSQYALGIIQAQPD-----QSESELVNQI HIV1B5 LTHTTNQKTELQAIHLALQDSGLE--VNIVTDSQYALGIIQAQPD-----KSESELVNQI HIV1N5 LTDTTNQKTELQAIHLALQDSGLE--VNIVTDSQYALGIIQAQPD-----KSESELVSQI HIV1ND FTDTTNQKTELQAINLALQDSGLE--VNIVTDSQYALGIIQAQPD-----KSESELVSQI HIV1Z2 FTDTTNQKTELQAINLALQDSGLE--VNIVTDSQYALGIIQAQPD-----KSESELVSQI HIV1U4 LTETTNQKTELHAIHLALQDSGSE--VNIVTDSQYALGIIQAQPD-----RSESEIVNQI SIVCZ LENTTNQQAELKALLLALQDSDQQ--VNIVTDSQYVLGIIQSQPD-----HSESELVNQI HIV2CA LEQTTNQQAELEAFAMALTDSGPK--ANIIVDSQYVMGIVAGQPT-----ESENRIVNQI HIV2RO LEQTTNQQAELEAFAMALTDSGPK--VNIIVDSQYVMGISASQPT-----ESESKIVNQI HIV2SB LEQTTNQQAELEAFAMAVTDSGPK--VNIVVDSQYVMGIVTGQPA-----ESESRIVNKI HIV2KR LEQTTNQQAELEAFAMALTDSGPK--ANIIVDSQYVMGIVAGQPT-----ESESKLVNQI HIV2ST LEQTTNQQAELEAFAMAVTDSGPK--ANIIVDSQYVMGIVAGQPT-----ESESKIVNQI HIV2D1 LEQTSNQQAELEAFAMALADSGPK--VNIIVDSQYVMGIVAGQPT-----ESENRIVNQI HIV2G1 LERTTNQQAELEAFAMTLTDSGPK--VNIIVDSQYVMGIVVGQPT-----ESESRIVNQI Smanga_S4 LEQTTNQQAELEAFYLALADSGPK--ANIIVDSQYVMGIIAGQPT-----ESESRLVNQI Smanga_SP LEQTTNQQAELEAFYLALADSGPK--ANIIVDSQYVMGIVAGQPT-----ESESRLVNQI HTLV PPHKSAQRAELLGLLHGLSSARSWRCLNIFLDSKYLYHYLRTLALGTFQGRSSQAPFQAL .: *::** .: : .: **. **:* . .*.. .. : HIV1MN IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRA HIV1OY IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRA HIV1H2 IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDEHEKYHSNWRA HIV1PV IEQLIKKQKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRA HIV1B5 IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEEHEKYHSNWRA HIV1N5 IEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRA HIV1ND IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVLFLDGIDKAQEEHEKYHNNWRA HIV1Z2 IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVLFLDGIDKAQEEHEKYHNNWRA HIV1U4 IEKLIEKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHCNWRA SIVCZ IEELIKKEKIYLSWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDRAQEEHERYHSNWKA HIV2CA IEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHTNVKE HIV2RO IEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKE HIV2SB IEEMIKKEAIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLERIEPAQEEHGKYHSNVKE HIV2KR IEEMIKKETLYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKE HIV2ST IEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKE HIV2D1 IEDMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNIKE HIV2G1 IEDMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLERIEPAQEEHEKYHSNMKE Smanga_S4 IEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLKKIEPAQEEHEKYHSNVKE Smanga_SP IEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKE HTLV LPRLLSRKVVYLHHVRSHTNLPDPISRLNALTD---ALLITPVLQLSPAELHSFTHCGQT : ::.:: :*: * :*..: . . :: :*: :: : : : : HIV1MN MASDFNLPPIVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1OY MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKIILV HIV1H2 MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1PV MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1B5 MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1N5 MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1ND MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1Z2 MASDFNLPPVVAKEIVASCDKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV HIV1U4 MASDFNLPPVVAKEIVASCNKCQ---LKGEAMHGQVDCSPG---IWQLDCTHLEGKVILV SIVCZ MASDFNLPPIVAKEIVAHCDKCQ---VKGEAMHGQVDCSPG---IWQVDCTHLEGKVIIV HIV2CA LCHKFDIPQLVARQIVNTCAQYQ---QKGEAIHGQVNAEVG---TWQMDCTHLEGKIIIV HIV2RO LSHKFGIPNLVARQIVNSCAQCQ---QKGEAIHGQVNAELG---TWQMDCTHLEGKIIIV HIV2SB LAHKFGLPNLVARQIVNTCAQCQ---QKGEAIHGQVNAELG---TWQMDCTHLEGKIIIV HIV2KR LSHKFGLPKLVARQIVNTCAQCQ---QKGEAIHGQVDAELG---TWQMDCTHLEGKIIIV HIV2ST LSHKFGLPKLVARQIVNTCTQCQ---QKGEAIHGQVNAELG---TWQMDCTHLEGKIIIV HIV2D1 LTHKFGIPQLVARQIVNTCAQCQ---QKGEAIHGQVNAEIG---VWQMDCTHLEGKIIIV HIV2G1 LTHKFGIPQLVARQIVNTCAQCQ---QKGEAIHGQVNAEIG---VWQMDCTHLEGKIIIV Smanga_S4 LVFKFGLPRLVAKQIVDTCDKCH---QKGEAIHGQVNAELG---TWQMDCTHLEGKIIIV Smanga_SP LVFKFGLPRLVAKQIVDTCDKCH---QKGEAIHGQVNAELG---TWQMDCTHLEGKIIIV HTLV ALTLQGATTTEASNILRSCHACRGGNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLY . . * :*: * : : : :*:: ** * **:: * : HIV1MN AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKTIHTDNGPNFTSTTVKAAC HIV1OY AVHVASGYIEAEVIPAETGQET-----AYFILKLAGRWPVKTIHTDNGSNFTSTTVKAAC HIV1H2 AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKTIHTDNGSNFTGATVRAAC HIV1PV AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKTIHTDNGSNFTSATVKAAC HIV1B5 AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKTIHTDNGSNFTSATVKAAC HIV1N5 AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAAC HIV1ND AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKVVHTDNGSNFTSATVKAAC HIV1Z2 AVHVASGYIEAEVIPAETGQET-----AYFILKLAGRWPVKIVHTDNGSNFTSAAVKAAC HIV1U4 AVHVASGYIEAEVIPAETGQET-----AYFILKLAGRWPVKVIHTDNGSNFTSAAVKAVC SIVCZ AVHVASGYIEAEVIPAETGQET-----AYFLLKLAGRWPVKTIHTDNGPNFTSAAVKAAC HIV2CA AVHVASGFIEAEVIPQESGRQT-----ALFLLKLASRWPITHLHTDNGANFTSQEVKMVA HIV2RO AVHVASGFIEAEVIPQESGRQT-----ALFLLKLASRWPITHLHTDNGANFTSQEVKMVA HIV2SB AVHVASGFIEAEVIPQESGRQT-----ALFLLKLASRWPITHLHTDNGANFTSQEVKMVA HIV2KR AVHVASGFIEAEVIPQETGRQT-----ALFLLKLASRWPITHLHTDNGANFTSQEVKMVA HIV2ST AVHVASGFIEAEVIPQESGRQT-----ALFLLKLASRWPITHLHTDNGANFTSQEVKMVA HIV2D1 AVHVASGFIEAEVIPQESGRQT-----ALFLLKLASRWPITHLHTDNGPNFTSQEVKMVA HIV2G1 AVHVASGFIEAEVIPQESGRQT-----ALFLLKLASRWPITHLHTDNGSNFTSQEVKMVA Smanga_S4 AVHVASGFIEAEVIPQETGRQT-----ALFLLKLAGRWPITHLHTDNGANFTSQEVKMVA Smanga_SP AVHVASGFIEAEVIPQETGRQT-----ALFLLKLASRWPITHLHTDNGANFTSQEVKMVA HTLV RLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAHLGKPSYINTDNGPAYISQDFLNMC :** . :.. : . :. ::* : :: :* . ::****. : . . . HIV1MN WWTGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKRAVQMAVFIHNFKRKGG HIV1OY WWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1H2 WWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1PV WWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1B5 WWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1N5 WWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1ND WWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1Z2 WWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV1U4 WWANIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGG SIVCZ WWADIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGG HIV2CA WWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAVHCMNFKRRGG HIV2RO WWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAIHCMNFKRRGG HIV2SB WWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIERIREQANTMETIVLMAVHCMNFKRRGG HIV2KR WWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAVHCMNFKRRGG HIV2ST WWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAVHCMNFKRRGG HIV2D1 WWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGG HIV2G1 WWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGG Smanga_S4 WWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVHCMNFKRRGG Smanga_SP WWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVHCMNFKRRGG HTLV TSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNV *.: :**** *.*::* * **. : : : : ::: .::: . HIV1MN IGGYSAGERIVGIIATDIQTKELQKQITKIQNFRVYYRDSRD-PLWKGPAKLLWKGEGAV HIV1OY IGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRE-PLWKGPAKLLWKGEGAV HIV1H2 IGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRN-PLWKGPAKLLWKGEGAV HIV1PV IGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRN-PLWKGPAKLLWKGEGAV HIV1B5 IGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRN-PLWKGPAKLLWKGEGAV HIV1N5 IGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRD-PVWKGPAKLLWKGEGAV HIV1ND IGGYSAGERIIDIIATDIQTRELQKQIIKIQNFRVYYRDSRD-PIWKGPAKLLWKGEGAV HIV1Z2 IGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRD-PIWKGPAKLLWKGEGAV HIV1U4 IGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRD-PIWKGPAKLLWKGEGAV SIVCZ IGGYTAGERIIDIIATDIQTSELQKQILKVQKFRVYYRDSRD-PIWKGPATLLWKGEGAV HIV2CA IGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRD-QLWKGPGELLWKGDGAV HIV2RO IGDMTPSERLINMITTEQEIQFLQAKNSKLKDFRVYFREGRD-QLWKGPGELLWKGEGAV HIV2SB IGDMTPVERLVNMITTEQEIQFLQAKNSKLKNFRVYFREGRN-QLWQGPGELLWKGDGAV HIV2KR IGDMTPAERLINMITTEQEIQFLHAKNSKLKNFRVYFREGRD-QLWKGPGELLWKGDGAV HIV2ST IGDMTPAERLINMVTAEQEIQFLQAKNSKLQNFRVYFREGRD-QLWKGPGELLWKGDGAV HIV2D1 IGDMTPAERLINMITTEQEIQFLQRKNSNFKKFQVYYREGRD-QLWKGPGELLWKGDGAV HIV2G1 IGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRD-QLWKGPGELLWKGDGAV Smanga_S4 IGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRD-QLWKGPGELLWKGEGAV Smanga_SP IGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRD-QLWKGPGELLWKGEGAV HTLV LTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGAA : . . : . : : .: : . : *:** * :. **. HIV1MN VIQD-NNDIKVVPRRKAKVIRDYG--KQTAGDDCVASRQDED---- HIV1OY VIQD-NSDIKVVPRRKAKIIRDYG--KQMAGDDCVASRQDED---- HIV1H2 VIQD-NSDIKVVPRRKAKIIRDYG--KQMAGDDCVASRQDED---- HIV1PV VIQD-NSDIKVVPRRKAKIIRDYG--KQMAGDDCVASRQDED---- HIV1B5 VIQD-NSDIKVVPRRKAKIIRDYG--KQMAGDDCVASRQDED---- HIV1N5 VIQD-NSDIKVVPRRKAKIIRDYG--KQMAGDDCVASRQDED---- HIV1ND VIQD-NSDIKVVPRRKVKIIRDYG--KQMAGDDCVASRQDED---- HIV1Z2 VIQD-NSDIKVVPRRKVKIIRDYG--KQMAGDDCVASRQDED---- HIV1U4 VIQD-NSDIKVVPRRKAKIIRDYG--KQMAGDDCMAGRQDED---- SIVCZ VIQD-QGELKVVPRRKAKIIRDYG--KQMAGDDCVASRQNED---- HIV2CA IVKV-GTDIKIIPRRKAKIIRDYGGRQELDSSSHLEGARE-NGEVA HIV2RO LVKV-GTDIKIIPRRKAKIIRDYGGRQEMDSGSHLEGARE-DGEMA HIV2SB IVKV-GTDIKVIPRRKAKIIRDYGPRQEMDSGSHLEGARE-DGEMA HIV2KR IVKV-GTDIKIVPRRKAKIIRDYGGRREVDSSSHLEGTRE-DGEVA HIV2ST IVKV-GADIKIIPRRKAKIIKDYGGRQEMDSGSNLEGARE-DGEVA HIV2D1 IVKV-GADIKVVPRRKAKIIRDYGGRQELDSSSHLEGARE-DGEVA HIV2G1 IVKV-GADIKVIPRRKAKIIRDYGGRQELDSS-HLEGAREEDGEVA Smanga_S4 ILKV-GTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGE-AREVA Smanga_SP ILKV-GTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGE-AREVA HTLV LIPVSASSAQWIPWR---LLKRAACPRPVGGPADPKEKDLQHHG-- :: . : :* * ::: . : .